User profiles for Vincent Hanlon

Vincent CT Hanlon

Postdoctoral Researcher, Crop Science Centre, Cambridge University
Verified email at bccrc.ca
Cited by 226

Somatic mutations substantially increase the per-generation mutation rate in the conifer Picea sitchensis

VCT Hanlon, SP Otto, SN Aitken - Evolution letters, 2019 - academic.oup.com
The rates and biological significance of somatic mutations have long been a subject of debate.
Somatic mutations in plants are expected to accumulate with vegetative growth and time, …

[PDF][PDF] Benchmarking challenging small variants with linked and long reads

…, V Bansal, P Ebert, T Marschall, P Lansdorp, V Hanlon… - Cell Genomics, 2022 - cell.com
Genome in a Bottle benchmarks are widely used to help validate clinical sequencing pipelines
and develop variant calling and sequencing methods. Here we use accurate linked and …

A survey of current methods to detect and genotype inversions

VCT Hanlon, PM Lansdorp, V Guryev - Human Mutation, 2022 - Wiley Online Library
Polymorphic inversions are ubiquitous in humans and they have been linked to both
adaptation and disease. Following their discovery in Drosophila more than a century ago, …

[PDF][PDF] Parent-of-origin detection and chromosome-scale haplotyping using long-read DNA methylation sequencing and Strand-seq

V Akbari, VCT Hanlon, K O'Neill, L Lefebvre… - Cell Genomics, 2023 - cell.com
Hundreds of loci in human genomes have alleles that are methylated differentially according
to their parent of origin. These imprinted loci generally show little variation across tissues, …

[PDF][PDF] Construction of Strand-seq libraries in open nanoliter arrays

VCT Hanlon, DD Chan, Z Hamadeh, Y Wang… - Cell reports …, 2022 - cell.com
Single-cell Strand-seq generates directional genomic information to study DNA repair, assemble
genomes, and map structural variation onto chromosome-length haplotypes. We report …

[HTML][HTML] InvertypeR: Bayesian inversion genotyping with Strand-seq data

VCT Hanlon, CA Mattsson, DCJ Spierings, V Guryev… - BMC genomics, 2021 - Springer
Background Single cell Strand-seq is a unique tool for the discovery and phasing of genomic
inversions. Conventional methods to discover inversions with Strand-seq data are blind to …

Chromosome-length haplotypes with StrandPhaseR and Strand-seq

VCT Hanlon, D Porubsky, PM Lansdorp - Haplotyping: Methods and …, 2022 - Springer
Dense local haplotypes can now readily be extracted from long-read or droplet-based sequence
data. However, these methods struggle to combine subchromosomal haplotype blocks …

Mapping of sister chromatid exchange events and genome alterations in single cells

Z Hamadeh, V Hanlon, PM Lansdorp - Methods, 2022 - Elsevier
Mammalian genomes encode over a hundred different helicases, many of which are implicated
in the repair of DNA lesions by acting on DNA structures arising during DNA replication, …

[HTML][HTML] Days of the Hajj

V Hanlon - CMAJ, 2000 - Can Med Assoc
Canadians Out of Bounds to the man’s family. We don’t have a designated quiet room in the
emergency department for discussion of catastrophic events. A 3-way conversation ensued …

[HTML][HTML] Körperwelten/Body Worlds

V Hanlon - CMAJ, 2003 - Can Med Assoc
Worlds Exhibition, 2003.© Prof. Dr. Gunther von Hagens, Institut für Plastination, Heidelberg,
Germany. www. bodyworlds. com into bones; the heart is a muscular pump connected to a …