Basic local alignment search tool
A new approach to rapid sequence comparison, basic local alignment search tool (BLAST),
directly approximates alignments that optimize a measure of local similarity, the maximal …
directly approximates alignments that optimize a measure of local similarity, the maximal …
Database resources of the national center for biotechnology information
…, Y Kapustin, D Landsman, DJ Lipman… - Nucleic acids …, 2010 - academic.oup.com
In addition to maintaining the GenBank® nucleic acid sequence database, the National
Center for Biotechnology Information (NCBI) provides analysis and retrieval resources for the …
Center for Biotechnology Information (NCBI) provides analysis and retrieval resources for the …
Rapid and sensitive protein similarity searches
DJ Lipman, WR Pearson - Science, 1985 - science.org
An algorithm was developed which facilitates the search for similarities between newly
determined amino acid sequences and sequences already available in databases. Because of …
determined amino acid sequences and sequences already available in databases. Because of …
Rapid similarity searches of nucleic acid and protein data banks.
WJ Wilbur, DJ Lipman - Proceedings of the National …, 1983 - National Acad Sciences
With the development of large data banks of protein and nucleic acid sequences, the need
for efficient methods of searching such banks for sequences similar to a given sequence has …
for efficient methods of searching such banks for sequences similar to a given sequence has …
Improved tools for biological sequence comparison.
WR Pearson, DJ Lipman - Proceedings of the National …, 1988 - National Acad Sciences
We have developed three computer programs for comparisons of protein and DNA sequences.
They can be used to search sequence data bases, evaluate similarity scores, and identify …
They can be used to search sequence data bases, evaluate similarity scores, and identify …
A genomic perspective on protein families
RL Tatusov, EV Koonin, DJ Lipman - Science, 1997 - science.org
In order to extract the maximum amount of information from the rapidly accumulating genome
sequences, all conserved genes need to be classified according to their homologous …
sequences, all conserved genes need to be classified according to their homologous …
GenBank
…, K Clark, I Karsch-Mizrachi, DJ Lipman… - Nucleic acids …, 2012 - academic.oup.com
GenBank® ( http://www.ncbi.nlm.nih.gov ) is a comprehensive database that contains publicly
available nucleotide sequences for almost 260 000 formally described species. These …
available nucleotide sequences for almost 260 000 formally described species. These …
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
The BLAST programs are widely used tools for searching protein and DNA databases for
sequence similarities. For protein comparisons, a variety of definitional, algorithmic and …
sequence similarities. For protein comparisons, a variety of definitional, algorithmic and …
Database resources of the national center for biotechnology information
…, O Khovayko, D Landsman, DJ Lipman… - Nucleic acids …, 2007 - academic.oup.com
In addition to maintaining the GenBank(R) nucleic acid sequence database, the National
Center for Biotechnology Information (NCBI) provides analysis and retrieval resources for the …
Center for Biotechnology Information (NCBI) provides analysis and retrieval resources for the …
GenBank
DA Benson, I Karsch-Mizrachi, DJ Lipman… - Nucleic acids …, 2009 - academic.oup.com
GenBank ® is a comprehensive database that contains publicly available nucleotide sequences
for more than 300 000 organisms named at the genus level or lower, obtained primarily …
for more than 300 000 organisms named at the genus level or lower, obtained primarily …