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Thomas Hudson is President and Scientific Director of the Ontario Institute for Cancer Research, Toronto, Ont. He is also a professor in the Departments of Molecular Genetics and Medical Biophysics, Faculty of Medicine, University of Toronto, Toronto, Ont.
Correspondence to: Dr. Thomas J. Hudson, MaRS Centre, South Tower, 101 College St., Ste. 800, Toronto ON M5G 0A3; tom.hudson{at}oicr.on.ca
The sequencing of the human genome has paved the way for discoveries that are providing new insight into the causes of human diseases. The medical application of this knowledge to individuals is ushering in a new era of personalized medicine. Translating this into benefits for patients and society will create challenges and opportunities for biomedical research, the medical profession and the health care system.
In the 7 years since the first draft of the human genome sequence was released, 1 there has been an explosion in knowledge about the genetic causes of common and rare diseases. 2,3 New technologies allow rapid, comprehensive and accurate measures of genes and proteins in blood and other tissues, leading to more accurate diagnoses and new ways of predicting adverse effects of drugs. This knowledge is disseminating into clinical investigative disciplines such as pathology, radiology and nuclear medicine. Drug-development programs in biotechnology and pharmaceutical companies are rapidly moving toward a "target-based" approach as a result of the increasingly precise molecular understanding of diseases. An example of a cancer gene target that has been used as a molecular marker is HER2/neu, which encodes the protein targeted by the therapeutic antibody trastuzumab. 4 Considerable research is underway to identify additional target genes and proteins involved in many human diseases, with the hope that targeted therapies will prove more effective and less likely to affect normal tissues (i.e., cause unnecessary adverse outcomes). Genetic testing companies are multiplying, and some are capitalizing on the appetite of consumers to "know" more about their risk of developing diseases, irrespective of the predictive accuracy or inaccuracy of the test.
There is deep concern that too few discoveries will benefit Canadian patients, unless there are transformative changes in biomedical research and health care delivery that enable quick assessment of a rapidly growing number of new diagnostics and therapeutics, clear guidelines regarding usage in medical care, enabling policies, and appropriate levels of reimbursement. Commercial opportunities arising from Canadian laboratories in academia and biotechnology companies are at stake if funding and other support mechanisms are not competitive with those in other jurisdictions. All the stakeholders, funding agencies, researchers, clinicians, health service providers and governments appreciate the challenges, but no one seems to have a full grasp of what is needed to pave the way for personalized medicine. No one can be blamed for the exponential burst of genome-driven applications. The genomic revolution is happening too quickly! Let’s not panic —this is a good problem!
Waves of translation
There are many outstanding opportunities in the short term that should not be missed. Canada has an outstanding research community involved in international projects that have described the complexity of the variation in the human genome 5,6 and that have developed methods to study this variation in medical research. In conjunction with other international discoveries, 3 Canadians have been involved in the first wave of translation leading to personalized medicine: discovery of genes, mutations, biomarkers and molecular pathways that are associated with diseases such as autism, 7 type 2 diabetes, 8 coronary artery disease, 9 inflammatory bowel disease, 10–12 susceptibility to infection, 13 colon cancer 14 and drug response. 15 Canadian scientists have been successful in engaging multiple partners within Canada and beyond, including large multinational companies with funding to support large-scale genome-style research projects (e.g., the Structural Genomics Consortium). More discovery research that is driven by a powerful new generation of genome technologies is needed. These technologies make it possible to conduct the comprehensive and high-resolution genome analyses that are needed for the study of large numbers of disease genes in numerous patients with these diseases. New international disease genome projects, such as the International Cancer Genome Consortium, are underway and will generate data sets that are more than a 1000-fold larger than the original sequence obtained by the Human Genome Project. Canadian scientists cannot lag behind after leaping ahead and securing prominent positions on international podiums.
To launch the second wave of translation activity from the Human Genome Project to personalized medicine, major investment is needed in clinical research to integrate new genomic knowledge in clinical trials and population research. Important challenges need to be addressed, including a paucity of clinician researchers, particularly in disciplines such as molecular pathology and imaging, hesitancy in moving toward larger and more complex clinical trials that include testing diagnostic markers in combination with drugs, and inadequate funding from funding agencies and industry of these "high-content" trials. The increasing complexity of regulatory approval hinders the use of new trial designs, even if these would provide important information about responders, nonresponders and individuals at high risk for adverse outcomes. It is exciting to note that after a decade of planning workshops, Canada is finally launching large population studies, such as the Canadian Partnership for Tomorrow Project, that are well coordinated with international cohorts, such as the Public Population Project in Genomics. These critical resources will need long-term support to realize their potential for understanding the effects of genes and environment in disease predisposition.
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Partnership for action
Where do we start? Let’s review the mechanisms that support research in personalized medicine. Let’s identify the funding gaps. Let’s take a hard look at the barriers between agencies. Let’s recognize that no funding agency has a monopoly on ideas, mandates or the research community. Let’s look at the barriers to translation between basic and clinical sciences. Let’s create synergies between agencies that fund technology platforms, clinical research, infrastructure and training. Let’s create funding envelopes dedicated to personalized medicine, including discovery, clinical research and commercialization. Given that these goals need to be developed coherently and inclusively, let’s create a partnership of stakeholders in academia, governments, foundations and companies. The Personalized Medicine Coalition, based in Washington, DC, is a model to consider. Canada may have opportunities to develop unique approaches to personalized medicine, given its universal health care coverage, international leadership in human genetic research, high participation rates in clinical trials and access to computerized provincial health databases for evaluation of safety and effectiveness of therapeutic interventions. We have opportunities to become leaders in this new industry. Let’s think outside the box to capitalize on Canadian strengths and provide a model that may benefit other nations.
Should we wait for an economic recovery in Canada before we start addressing this problem? No. The consequences of chronic disorders for individuals, their families and society are enormous. In less than a decade, genomics has yielded important new insight into the causes and mechanisms of chronic disorders and drug response that point to the undisputed fact that most of the diagnostic categories that we currently use in medicine classify patients into clusters that overlook the fact that individual patients have different diseases and responses to therapies. There clearly is a benefit to research in personalized medicine: prevention and screening strategies targeting high-risk individuals, avoidance of serious adverse outcomes, and better matching of therapies to disease and individual profiles. If we are slow to act, there will be economic consequences because we will lose opportunities for the development and commercialization of new products and for the creation of new jobs in Canada. Canada will also fail to benefit from a reduction in the staggering costs because of the loss of productivity caused by illness.
Additional resources
Canada Foundation for Innovation
Canadian Institutes of Health Research
Canadian Partnership for Tomorrow Project
Human Genome Project
Structural Genomics Consortium
International Cancer Genome Consortium
Ontario Institute for Cancer Research
Networks of Centres of Excellence
Personalized Medicine Coalition
Public Population Project in Genomics
Footnotes
Published at www.cmaj.ca on Feb. 18, 2009.
Competing interests: Thomas Hudson is affiliated with several projects discussed in this article. He is cofounder of the International Cancer Genome Consortium and the Public Population Project in Genomics. Thomas Hudson is president and scientific director of the Ontario Institute for Cancer Research, which is funded by the Government of Ontario through the Ministry of Research and Innovation. He currently receives research funds from Genome Canada, the Canadian Cancer Society, the European Commission and the US National Institutes of Health. He is a past recipient of salary or research awards from the Canadian Institutes of Health Research, the Canada Foundation for Innovation, and the Networks of Centres of Excellence. Thomas Hudson has also been vice-chair of the Board of Directors for Genome Canada (2005–2008) and a member of the Institute Advisory Board, Canadian Institutes of Health Research Institute of Genetics (2001–2006).
REFERENCES
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